STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)    
Predicted Functional Partners:
LOC107093479
FIP1 like 1b (S. cerevisiae).
   
 0.981
cpsf6
Cleavage and polyadenylation specific factor 6.
   
 0.971
CPSF7
Cleavage and polyadenylation specific factor 7.
   
 0.957
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.955
YTHDC2
YTH domain containing 2.
   
 0.952
ythdc1
YTH domain containing 1.
    
 
 0.930
cstf2
Cleavage stimulation factor, 3' pre-RNA, subunit 2.
   
 0.925
cpsf2
Cleavage and polyadenylation specificity factor subunit 2.
   
 
 0.923
LOC107085466
Uncharacterized protein.
    
 0.907
zc3h4
Zinc finger CCCH-type containing 4.
    
 0.907
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.