STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095037GED domain-containing protein. (482 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
   
 0.985
LOC107104443
Intersectin 2b.
    
 
 0.748
ENSCVAP00000031587
Uncharacterized protein.
    
 
 0.748
ENSCVAP00000031602
Uncharacterized protein.
    
 
 0.748
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
   
 0.711
LOC107094091
Mitochondrial elongation factor 2.
    
 
 0.705
pink1
PTEN induced kinase 1.
    
 0.682
itsn1
Intersectin 1 (SH3 domain protein).
    
 
 0.636
LOC107081972
SH3-domain GRB2-like 1b.
   
 0.603
LOC107096572
SH3 domain containing GRB2 like 2a, endophilin A1.
   
 0.603
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.