Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rspo2R-spondin 2. (246 aa)    
Predicted Functional Partners:
ENSCVAP00000014691
Zinc and ring finger 3.
    
 0.995
rnf43
Ring finger protein 43.
    
 0.993
lgr4
Leucine-rich repeat containing G protein-coupled receptor 4.
   
 0.960
LGR6
Leucine rich repeat containing G protein-coupled receptor 6.
    
 0.925
LGR5
Leucine rich repeat containing G protein-coupled receptor 5.
   
 0.624
LOC107084043
Si:ch211-81a5.1.
    
 0.562
rnf115
Ring finger protein 115.
    
 0.562
rnf215
Ring finger protein 215.
    
 0.562
LOC107092296
RING-type domain-containing protein.
    
 0.562
RNF126
Ring finger protein 126.
    
 0.562
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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