STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107093889Cylindromatosis (turban tumor syndrome), b. (733 aa)    
Predicted Functional Partners:
Ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.959
spata2
Spermatogenesis associated 2.
     
 0.954
LOC107083549
BCL3 transcription coactivator.
   
 0.922
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
    
 0.920
LOC107086824
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.920
LOC107082055
Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
    
 0.920
LOC107091977
Uncharacterized protein.
  
  
 
0.907
cyld
Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.
  
  
 
0.906
LOC107088898
Uncharacterized protein.
     
  0.900
rps27a
Ribosomal protein S27a.
   
  0.863
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.