STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107090480Caspase 3, apoptosis-related cysteine peptidase a; Belongs to the peptidase C14A family. (281 aa)    
Predicted Functional Partners:
birc2
Baculoviral IAP repeat containing 2.
   
 0.975
casp9
Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
    
0.967
LOC107086824
Uncharacterized protein; Belongs to the peptidase C14A family.
   
0.961
LOC107082055
Caspase 10, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
   
0.961
parp1
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
   
 0.958
LOC107099875
Baculoviral IAP repeat containing 5a.
   
 0.948
LOC107100240
Uncharacterized protein.
   
  0.947
stk3
Serine/threonine kinase 3 (STE20 homolog, yeast).
   
  0.947
Sptan1
Uncharacterized protein.
   
 0.946
LOC107086758
Baculoviral IAP repeat containing 5b.
   
 0.943
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.