STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107089914Uncharacterized protein. (496 aa)    
Predicted Functional Partners:
ranbp2
RAN binding protein 2.
   
 
 0.890
rsph9
Radial spoke head 9 homolog.
  
 0.888
ENSCVAP00000015390
Uncharacterized protein.
    
 0.826
rsph3
Radial spoke head 3.
  
 
 0.775
RSPH1
Radial spoke head component 1.
   
 
 0.773
ENSCVAP00000028845
Uncharacterized protein.
   
  
 0.660
ENSCVAP00000020934
Dynein regulatory complex subunit 3.
   
  
 0.638
Als2
Uncharacterized protein.
    
 
 0.603
LOC107083525
Uncharacterized protein.
    
 
 0.603
snupn
Snurportin 1.
    
 
 0.598
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.