STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000008071Uncharacterized protein. (75 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 
 0.942
ubxn1
UBX domain protein 1.
   
 
 0.714
faf1
Fas (TNFRSF6) associated factor 1.
    
 
 0.681
polr3h
Polymerase (RNA) III (DNA directed) polypeptide H.
      
 0.664
PUF60
Poly-U binding splicing factor b.
      
 0.664
taok2
Protein kinase domain-containing protein.
      
 0.662
LOC107101178
Protein yippee-like; Belongs to the yippee family.
      
 0.661
sez6l2
Seizure related 6 homolog (mouse)-like 2.
     
 0.648
LOC107084762
Coronin; Belongs to the WD repeat coronin family.
      
 0.644
kif22
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
      
 0.630
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.