STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000008093Uncharacterized protein. (425 aa)    
Predicted Functional Partners:
gtf3c5
General transcription factor IIIC, polypeptide 5.
   
 0.935
gtf3c4
General transcription factor IIIC, polypeptide 4.
   
 0.927
ENSCVAP00000002247
TPR_REGION domain-containing protein.
    
 0.906
ENSCVAP00000012610
B-block_TFIIIC domain-containing protein.
 
   
  0.860
bdp1
SANT domain-containing protein.
    
 0.816
Znf512
Zinc finger protein 512.
   
 0.762
znf512b
Zinc finger protein 512B.
   
 0.762
ENSCVAP00000010188
Uncharacterized protein.
    
 0.751
ENSCVAP00000029932
TFIIB-type domain-containing protein.
   
 
 0.747
LOC107098169
TFIIB-type domain-containing protein.
   
 
 0.747
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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