STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107103703Fras1 related extracellular matrix 3. (2631 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.759
ENSCVAP00000007064
Uncharacterized protein.
 
     0.633
ranbp2
RAN binding protein 2.
   
 
  0.550
gle1
GLE1 RNA export mediator.
    
 0.462
fras1
Fraser extracellular matrix complex subunit 1.
   
 
0.441
asf1b
Anti-silencing function 1B histone chaperone.
   
 0.437
LOC107100137
Anti-silencing function 1Ba histone chaperone.
   
 0.437
arl6ip1
ADP-ribosylation factor-like 6 interacting protein 1.
   
 
 0.425
rps15a
Ribosomal protein S15a; Belongs to the universal ribosomal protein uS8 family.
   
 
 0.425
rps24
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.423
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.