STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smu1SMU1 DNA replication regulator and spliceosomal factor b. (507 aa)    
Predicted Functional Partners:
ik
Uncharacterized protein.
   
 0.975
mfap1
Microfibril associated protein 1.
   
 0.948
zmat2
Zinc finger, matrin-type 2.
    
 0.891
prpf38a
Pre-mRNA processing factor 38A.
   
 0.881
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
    
 0.855
wbp4
Uncharacterized protein.
    
 0.833
UBL5
Ubiquitin like 5.
    
 0.819
txnl4a
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
  0.798
snrnp200
Small nuclear ribonucleoprotein 200 (U5).
   
 
 0.752
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 
 0.724
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.