STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107097664IF rod domain-containing protein; Belongs to the intermediate filament family. (466 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
   
 0.795
ranbp2
RAN binding protein 2.
   
 0.654
rbbp5
Retinoblastoma binding protein 5.
    
 0.431
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.429
Tep1
Uncharacterized protein.
   
 0.427
ENSCVAP00000015184
TROVE domain-containing protein.
   
 0.427
atp5f1b
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.413
LOC107083428
CREB binding protein a.
    
 0.412
LOC107082570
Lysine (K)-specific demethylase 6B, b.
   
 0.409
kdm6b
Lysine (K)-specific demethylase 6B, a.
   
 0.409
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.