STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mkrn2Makorin, ring finger protein, 2. (401 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
     
 0.758
raf1
Raf-1 proto-oncogene, serine/threonine kinase a.
     
 0.704
gsk3b
Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.
   
 
 0.704
PPARG
Peroxisome proliferator activated receptor gamma.
 
    
 0.671
ppard
Peroxisome proliferator-activated receptor delta b.
 
    
 0.670
ENSCVAP00000021667
Ubiquitin-like domain-containing protein.
   
  0.619
LOC107090180
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
   
 
 0.553
gsk3a
Glycogen synthase kinase 3 alpha b; Belongs to the protein kinase superfamily.
   
 
 0.553
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
    0.549
rps27a
Ribosomal protein S27a.
    
  0.543
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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