STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107091077Growth arrest-specific 2b. (478 aa)    
Predicted Functional Partners:
catip
Ciliogenesis associated TTC17 interacting protein.
   
  0.585
ENSCVAP00000023398
Adenylate kinase 8.
   
    0.534
LOC107104443
Intersectin 2b.
    
 0.473
ENSCVAP00000031587
Uncharacterized protein.
    
 0.473
ENSCVAP00000031602
Uncharacterized protein.
    
 0.473
LOC107096760
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.450
tada3
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.418
SUPT3H
SPT3 homolog, SAGA and STAGA complex component.
    
 0.408
mrps5
Mitochondrial ribosomal protein S5.
      
 0.407
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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