STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000017007Uncharacterized protein. (887 aa)    
Predicted Functional Partners:
ENSCVAP00000016928
Calponin-homology (CH) domain-containing protein.
 
     0.734
itgb4
Integrin beta.
   
 0.691
LOC107090777
Junction plakoglobin a.
   
 0.660
DSC1
Desmocollin 3; Component of intercellular desmosome junctions. Involved in the interaction of plaque proteins and intermediate filaments mediating cell-cell adhesion.
   
 0.596
LOC107101293
Uncharacterized protein.
    
 0.516
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.516
Dst
Si:ch211-165e15.1.
 
      0.498
perp
P53 apoptosis effector related to pmp22.
   
 
 0.481
LOC107104443
Intersectin 2b.
    
 0.473
ENSCVAP00000031587
Uncharacterized protein.
    
 0.473
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.