STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107098087Collagen, type VIII, alpha 1b. (743 aa)    
Predicted Functional Partners:
nit2
Nitrilase family, member 2.
      
 0.661
nt5dc1
5'-nucleotidase domain containing 1.
      
 0.644
frem1
Fras1 related extracellular matrix 1a.
      
 0.629
lamc1
Laminin, gamma 1.
   
 0.533
epha7
Eph receptor A7.
    
 0.522
crim1
Uncharacterized protein.
    
 0.506
sema3g
Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family.
      
 0.497
tnfrsf1a
Tumor necrosis factor receptor superfamily, member 1a.
      
 0.489
col8a2
Collagen, type VIII, alpha 2.
  
  
 
0.442
Tep1
Uncharacterized protein.
    
 0.409
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.