STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000020137TBC1 domain family, member 30. (797 aa)    
Predicted Functional Partners:
nrip3
Uncharacterized protein.
    
 
 0.690
wdr90
WD repeat domain 90.
    
  0.626
rassf3
Ras association domain family member 3.
      
 0.582
ociad2
OCIA domain containing 2.
      
 0.548
lemd3
LEM domain containing 3.
      
 0.543
mcc
Usher syndrome 1C binding protein 1.
  
   
 0.519
ENSCVAP00000026957
Uncharacterized protein.
   
   0.494
ENSCVAP00000026875
Uncharacterized protein.
   
   0.489
leng1
Leukocyte receptor cluster (LRC) member 1.
      
 0.483
LOC107101379
Uncharacterized protein.
      
 0.483
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.