STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107094521Uncharacterized protein. (256 aa)    
Predicted Functional Partners:
ENSCVAP00000001965
Protein kinase domain-containing protein.
    
 0.681
cask
Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.
    
 0.681
ENSCVAP00000021138
Calcium/calmodulin dependent serine protein kinase; Belongs to the MAGUK family.
    
 0.681
letm2
Leucine zipper-EF-hand containing transmembrane protein 2.
      
 0.672
LOC107094839
Potassium voltage-gated channel, Shal-related subfamily, member 3; Belongs to the potassium channel family.
    
 0.661
KCND3
Potassium voltage-gated channel subfamily D member 3; Belongs to the potassium channel family.
    
 0.661
ENSCVAP00000024555
BTB domain-containing protein; Belongs to the potassium channel family.
    
 0.661
kcnd1
Potassium voltage-gated channel, Shal-related subfamily, member 1; Belongs to the potassium channel family.
    
 0.661
wdr90
WD repeat domain 90.
    
 0.512
xpc
Xeroderma pigmentosum, complementation group C.
    
 0.503
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.