STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc15a4Solute carrier family 15 member 4. (576 aa)    
Predicted Functional Partners:
slc7a4
Solute carrier family 7 member 4.
   
 
 0.679
ppil4
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
      
 0.672
sf3a1
Splicing factor 3a, subunit 1.
      
 0.671
glt1d1
Glycosyltransferase 1 domain containing 1.
      
 0.559
CXorf21
Chromosome X open reading frame 21.
    
 
 0.445
slc39a13
Solute carrier family 39 member 13.
    
 
 0.426
LOC107097201
Si:dkey-32n7.4.
   
  
 0.409
LOC107086175
Palmitoyl-protein thioesterase 2.
     
 0.404
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.