STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tube1Tubulin, epsilon 1; Belongs to the tubulin family. (443 aa)    
Predicted Functional Partners:
wdr90
WD repeat domain 90.
   
 0.801
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.729
cenpk
Centromere protein K.
   
 0.688
cenpm
Proliferation associated nuclear element.
   
 0.671
cenpn
Centromere protein N.
   
 0.656
LOC107088281
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 
 0.655
LOC107092110
Doublecortin-like kinase 1b; Belongs to the protein kinase superfamily.
    
 
 0.655
ENSCVAP00000027942
Uncharacterized protein.
    
 
 0.655
kif11
Kinesin family member 11; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
 
 0.650
tubd1
Tubulin, delta 1; Belongs to the tubulin family.
  
 
0.648
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.