STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000023195Radial spoke head 10 homolog B. (466 aa)    
Predicted Functional Partners:
LOC107081922
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.554
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.554
psmd9
Uncharacterized protein.
    
 0.554
rsph14
Uncharacterized protein.
   
 
 0.550
ENSCVAP00000032118
Guanylate kinase-like domain-containing protein.
    
 
 0.519
cfap99
Uncharacterized protein.
    
 
 0.510
Ccdc146
Uncharacterized protein.
      
 0.505
ENSCVAP00000006956
Uncharacterized protein.
   
 
 0.470
zswim2
Zinc finger, SWIM-type containing 2.
      
 0.461
cfap52
Cilia and flagella associated protein 52.
   
 0.452
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.