STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107089345Forkhead box J3. (616 aa)    
Predicted Functional Partners:
nf1
Neurofibromin 1b.
   
  
 0.548
ENSCVAP00000005423
Uncharacterized protein.
    
 0.523
E2F3
E2F transcription factor 3.
      
 0.512
LOC107082674
BTB domain-containing protein.
      
 0.503
tfap2e
Transcription factor AP-2 epsilon.
      
 0.471
LOC107085580
SRY-box transcription factor 6.
    
 
 0.462
LOC107097645
Bloodthirsty-related gene family, member 30.
   
 0.409
hoxc11
Homeobox C11a.
    
 
 0.405
ENSCVAP00000000718
ETS domain-containing protein.
    
 
 0.403
ets1
V-ets avian erythroblastosis virus E26 oncogene homolog 1.
    
 
 0.403
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.