STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcc1GRIP and coiled-coil domain containing 1. (762 aa)    
Predicted Functional Partners:
bysl
Bystin-like.
   
 0.963
ENSCVAP00000020611
NIN1 (RPN12) binding protein 1 homolog.
   
 0.953
tsr1
TSR1 ribosome maturation factor.
   
 0.952
ENSCVAP00000018165
LTV1 ribosome biogenesis factor.
   
 0.935
riok2
RIO kinase 2 (yeast).
   
 0.935
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
   
 0.925
Aatf
Uncharacterized protein.
   
 
 0.913
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.904
rps9
Ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
 0.900
LOC107086440
PWP2 small subunit processome component.
   
 
 0.898
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.