STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107094424Methyltransf_25 domain-containing protein. (241 aa)    
Predicted Functional Partners:
bysl
Bystin-like.
   
 0.945
trmt112
tRNA methyltransferase subunit 11-2.
   
 0.939
tsr1
TSR1 ribosome maturation factor.
   
 0.936
ENSCVAP00000018165
LTV1 ribosome biogenesis factor.
   
 0.932
ENSCVAP00000020611
NIN1 (RPN12) binding protein 1 homolog.
   
 0.926
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.922
rps2
Ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 0.912
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
  0.878
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.876
rps3a
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
  0.870
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.