STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx43DEAD (Asp-Glu-Ala-Asp) box polypeptide 43; Belongs to the DEAD box helicase family. (614 aa)    
Predicted Functional Partners:
LOC107103334
Potassium voltage-gated channel, KQT-like subfamily, member 5b; Belongs to the potassium channel family.
 
  
 
 0.698
LOC107098990
Potassium voltage-gated channel, KQT-like subfamily, member 5a; Belongs to the potassium channel family.
 
  
 
 0.698
slc17a5
Solute carrier family 17 member 5.
    
 
 0.674
sf3b1
Splicing factor 3b, subunit 1.
   
 0.638
ranbp2
RAN binding protein 2.
  
 0.620
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.620
magoh
Mago homolog, exon junction complex subunit.
    
 0.616
LOC107087339-2
NOP58 ribonucleoprotein homolog (yeast).
  
 
 0.611
sf3b3
Splicing factor 3b, subunit 3.
   
 0.602
prpf6
PRP6 pre-mRNA processing factor 6 homolog (S. cerevisiae).
   
 0.594
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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