STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095008Crystallin, beta B1, like 3; Belongs to the beta/gamma-crystallin family. (209 aa)    
Predicted Functional Partners:
LOC107104443
Intersectin 2b.
    
 0.829
ENSCVAP00000031587
Uncharacterized protein.
    
 0.829
ENSCVAP00000031602
Uncharacterized protein.
    
 0.829
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.713
mst1r
Macrophage stimulating 1 receptor b.
   
 0.632
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.632
LOC107097508
Macrophage stimulating 1 receptor a.
   
 0.632
LOC107086118
Guanine nucleotide binding protein (G protein), beta polypeptide 3b.
   
 0.552
tsc2
TSC complex subunit 2.
    
 0.544
LOC107093204
Myosin IXAb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.541
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.