STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107102394Tetraspanin. (228 aa)    
Predicted Functional Partners:
ptgfrn
Uncharacterized protein.
    
 
 0.807
igsf8
Immunoglobulin superfamily, member 8.
    
 
 0.756
cd81
Tetraspanin.
  
 
 
0.684
LOC107101972
Tetraspanin.
    
 
0.676
slc37a4
Solute carrier family 37 member 4a.
      
 0.661
cd36
CD36 molecule (thrombospondin receptor); Belongs to the CD36 family.
   
 0.628
cd63
Tetraspanin.
   
 
0.613
ENSCVAP00000020522
Uncharacterized protein; Belongs to the integrin alpha chain family.
   
 0.585
itga3
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
   
 0.585
LOC107085517
Si:dkey-237i9.8.
   
 0.543
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.