STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cnbpCCHC-type zinc finger, nucleic acid binding protein a. (166 aa)    
Predicted Functional Partners:
ENSCVAP00000023138
Heterogeneous nuclear ribonucleoprotein K.
   
  
 0.712
ENSCVAP00000032378
Uncharacterized protein.
   
  
 0.712
LOC107088984
Heterogeneous nuclear ribonucleoprotein K, like.
   
  
 0.712
mrm2
Mitochondrial rRNA methyltransferase 2.
   
 
 0.641
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.637
Dnajc30
DnaJ (Hsp40) homolog, subfamily C, member 30b.
    
 
 0.577
psme3
Proteasome activator subunit 3.
   
  
 0.520
RPL27A
Ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.507
SERBP1
HABP4_PAI-RBP1 domain-containing protein.
   
 
 0.504
serbp1
SERPINE1 mRNA binding protein 1a.
   
 
 0.504
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.