STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FUBP3Far upstream element binding protein 3. (561 aa)    
Predicted Functional Partners:
LOC107105121
Uncharacterized protein.
   
 
 0.621
PUF60
Poly-U binding splicing factor b.
   
 
 0.621
parn
Poly(A)-specific ribonuclease (deadenylation nuclease).
   
 0.573
LOC107100983
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.495
QKI
QKI, KH domain containing, RNA binding 2.
   
 
 0.489
LOC107094928
QKI, KH domain containing, RNA binding a.
   
 
 0.489
exosc2
Exosome component 2.
   
  0.471
exosc3
Exosome component 3.
   
 
 0.468
exosc5
Exosome component 5.
   
 
 0.467
toe1
Target of EGR1, exonuclease.
   
 0.465
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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