STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abhd17bAbhydrolase domain containing 17B. (288 aa)    
Predicted Functional Partners:
LOC107090013
Dual specificity phosphatase 22b.
      
 0.665
fbxl22
F-box and leucine-rich repeat protein 22.
      
 0.665
srgap3
SLIT-ROBO Rho GTPase activating protein 3.
   
  
 0.663
fbxl3
F-box and leucine-rich repeat protein 3a.
      
 0.663
lypla1
Lysophospholipase 1.
     
 0.554
lypla2
Lysophospholipase 2.
     
 0.554
DGAT1
O-acyltransferase.
      
 0.489
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
     
 0.412
ENSCVAP00000022485
Sterol carrier protein 2b.
     
 0.412
CSDE1
Cold shock domain containing E1, RNA-binding.
   
 
 0.411
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.