STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095606Cholinergic receptor, nicotinic, alpha 5. (477 aa)    
Predicted Functional Partners:
chrna1
Cholinergic receptor, nicotinic, alpha 1 (muscle).
  
0.721
LOC107100071
Synaptic vesicle glycoprotein 2.
      
 0.665
LOC107088333
Cholinergic receptor, nicotinic, alpha 4b.
  
0.620
LOC107082852
Cholinergic receptor, nicotinic, alpha 2b (neuronal).
  
0.618
LOC107095159
Cholinergic receptor, nicotinic, beta 4 (neuronal).
  
0.570
LOC107095115
Cholinergic receptor, nicotinic, alpha 3.
  
0.569
LOC107093752
Uncharacterized protein.
  
0.526
chrnb2
Cholinergic receptor, nicotinic, beta 2.
  
0.519
SV2C
Synaptic vesicle glycoprotein 2C.
      
 0.506
LOC107085679
Cholinergic receptor, nicotinic, beta 5b.
  
0.496
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.