STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lyrm1LYR motif containing 1; Belongs to the complex I LYR family. (120 aa)    
Predicted Functional Partners:
b9d1
B9 protein domain 1.
    
 0.736
cc2d2a
Coiled-coil and C2 domain containing 2A.
    
 0.728
B9d2
B9 domain containing 2.
    
 0.706
EEF2
Eukaryotic translation elongation factor 2.
    
 0.701
LOC107096963
Eukaryotic translation elongation factor 2b.
    
 0.701
tmem67
Transmembrane protein 67.
   
 
 0.687
TMEM216
Transmembrane protein 216.
     
 0.676
ahi1
Abelson helper integration site 1.
    
 0.669
etfrf1
LYR motif containing 5a; Belongs to the complex I LYR family.
      
 0.663
kin
Kin17 DNA and RNA binding protein.
    
 0.662
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.