STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrispH2_011159Glutamate--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (322 aa)    
Predicted Functional Partners:
TrispH2_000722
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.999
TrispH2_009662
Methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.983
TrispH2_004843
Bifunctional glutamate/proline--tRNA ligase.
  
 0.974
TrispH2_008548
60S ribosomal protein L30.
   
 0.966
TrispH2_000299
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 0.966
TrispH2_009068
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.963
TrispH2_007061
60S ribosomal protein L31.
   
 0.962
TrispH2_005691
60S ribosomal protein L21.
   
 0.961
TrispH2_002286
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 0.961
TrispH2_009911
60S ribosomal protein L36a; Belongs to the eukaryotic ribosomal protein eL42 family.
   
 0.959
Your Current Organism:
Trichoplax sp. H2
NCBI taxonomy Id: 287889
Other names: T. sp. H2
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