STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrispH2_010736U11/U12 small nuclear ribonucleoprotein 48 kDa protein. (541 aa)    
Predicted Functional Partners:
TrispH2_008023
Pre-mRNA-splicing factor CWC22-like protein.
    
 0.955
TrispH2_004291
Pre-mRNA-splicing factor syf2.
    
 0.948
TrispH2_005383
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
    
 0.945
TrispH2_009420
Small nuclear ribonucleoprotein F.
    
 0.943
TrispH2_002156
Coiled-coil domain-containing protein 94.
   
 0.941
TrispH2_003233
Small nuclear ribonucleoprotein Sm D2.
    
 0.936
TrispH2_009704
Pre-mRNA-splicing factor CWC25-like protein.
   
 0.933
TrispH2_007104
Small nuclear ribonucleoprotein G.
    
 0.929
TrispH2_002159
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.929
TrispH2_006631
Small nuclear ribonucleoprotein Sm D3.
    
  0.923
Your Current Organism:
Trichoplax sp. H2
NCBI taxonomy Id: 287889
Other names: T. sp. H2
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