STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrispH2_007632Putative ATP-dependent RNA helicase DDX41. (619 aa)    
Predicted Functional Partners:
TrispH2_001733
NKAP-like protein.
    
  0.829
TrispH2_005291
Peptidylprolyl isomerase domain and WD repeat-containing protein 1.
   
 0.822
TrispH2_003036
ATP-dependent RNA helicase A.
    
 0.773
TrispH2_001848
Pre-mRNA-processing factor 17.
    
  0.743
TrispH2_001069
Serine/arginine repetitive matrix protein 1.
    
  0.743
TrispH2_007845
Aly/REF export factor 2.
   
  0.732
TrispH2_004462
ATP-dependent RNA helicase DEAH12, chloroplastic.
   
 0.718
TrispH2_005383
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.702
TrispH2_005588
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
  
 
 
0.693
TrispH2_009302
Polymerase delta-interacting protein 3.
   
  0.674
Your Current Organism:
Trichoplax sp. H2
NCBI taxonomy Id: 287889
Other names: T. sp. H2
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