STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrispH2_007130ATP-dependent RNA helicase DDX42; Belongs to the DEAD box helicase family. (787 aa)    
Predicted Functional Partners:
TrispH2_004766
Splicing factor 3B subunit 1.
   
 0.999
TrispH2_005642
Splicing factor 3B subunit 3.
   
 0.996
TrispH2_007175
RNA-binding protein 7.
    
 0.989
TrispH2_004025
Splicing factor 3B subunit 2.
   
 0.986
TrispH2_008339
Splicing factor 3B subunit 6.
    
  0.981
TrispH2_006181
PHD finger-like domain-containing protein 5A.
    
 0.969
TrispH2_006001
Putative splicing factor 3B subunit 5.
    
 0.968
TrispH2_003190
Splicing factor 3A subunit 2.
    
 0.926
TrispH2_003189
Splicing factor 3A subunit 2.
    
 0.926
TrispH2_007818
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15.
   
 0.876
Your Current Organism:
Trichoplax sp. H2
NCBI taxonomy Id: 287889
Other names: T. sp. H2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.