STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrispH2_009335LIM domain transcription factor LMO4.1. (139 aa)    
Predicted Functional Partners:
TrispH2_007834
LIM domain-binding protein 2.
   
 0.838
TrispH2_000301
Transcription factor GATA-4.
   
 0.680
TrispH2_001151
Transcription factor GATA-5.
    
 0.670
TrispH2_001049
Transcription factor E2-alpha.
    
 0.645
TrispH2_009804
Achaete-scute-like protein 4.
    
 0.615
TrispH2_005730
Pancreas transcription factor 1 subunit alpha.
    
 0.615
TrispH2_003870
Achaete-scute-like protein 4.
    
 0.615
TrispH2_003872
Achaete-scute-like protein 5.
    
 0.615
TrispH2_003871
Achaete-scute-like protein 5.
    
 0.615
TrispH2_003758
Pancreas transcription factor 1 subunit alpha.
    
 0.615
Your Current Organism:
Trichoplax sp. H2
NCBI taxonomy Id: 287889
Other names: T. sp. H2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.