STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrispH2_005383Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (1215 aa)    
Predicted Functional Partners:
TrispH2_001848
Pre-mRNA-processing factor 17.
   
 0.999
TrispH2_003614
Pre-mRNA-splicing factor SLU7.
   
 0.998
TrispH2_009704
Pre-mRNA-splicing factor CWC25-like protein.
    
 0.997
TrispH2_002156
Coiled-coil domain-containing protein 94.
   
 0.997
TrispH2_007824
U5 small nuclear ribonucleoprotein 200 kDa helicase.
    
 
 0.993
TrispH2_008023
Pre-mRNA-splicing factor CWC22-like protein.
   
 0.992
TrispH2_004277
Cell division cycle 5-related protein.
   
 0.991
TrispH2_006834
Pre-mRNA-processing-splicing factor 8.
   
 
 0.990
TrispH2_002348
Protein BUD31-like protein.
    
 0.990
TrispH2_001951
Pre-mRNA-processing factor 19.
   
 0.990
Your Current Organism:
Trichoplax sp. H2
NCBI taxonomy Id: 287889
Other names: T. sp. H2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.