STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TrispH2_003741Serine--tRNA ligase, cytoplasmic. (965 aa)    
Predicted Functional Partners:
TrispH2_005966
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.894
TrispH2_001830
Tyrosine--tRNA ligase.
  
  
 0.885
TrispH2_004843
Bifunctional glutamate/proline--tRNA ligase.
  
 
 0.852
TrispH2_008200
L-seryl-tRNA(Sec) kinase.
     
 0.810
TrispH2_010252
Protein KTI12-like protein.
     
 0.794
TrispH2_009662
Methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.773
TrispH2_009466
40S ribosomal protein S14b; Belongs to the universal ribosomal protein uS11 family.
  
 
 0.743
TrispH2_001585
Lysine--tRNA ligase.
  
 
 0.742
TrispH2_001382
Phenylalanine--tRNA ligase alpha subunit.
   
 
 0.722
TrispH2_009535
Phenylalanine--tRNA ligase, mitochondrial.
   
 
 0.711
Your Current Organism:
Trichoplax sp. H2
NCBI taxonomy Id: 287889
Other names: T. sp. H2
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