STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_02045Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)    
Predicted Functional Partners:
DV20_08050
PAS/PAC sensor protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.956
DV20_42560
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.934
DV20_39270
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.884
DV20_18360
Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.861
DV20_38405
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.807
DV20_10370
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.804
DV20_38310
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
0.804
DV20_07170
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.786
DV20_00635
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.781
DV20_14655
RNA polymerase sigma70; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.656
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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