STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_05945Methylhydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (672 aa)    
Predicted Functional Partners:
DV20_05940
Hydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
DV20_28620
Methylhydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.999
DV20_22225
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.868
DV20_26780
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.868
DV20_05930
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.811
DV20_16815
Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.807
DV20_05935
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
DV20_05950
Acetolactate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.
       0.782
DV20_10780
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.757
DV20_07895
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.699
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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