STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_06275Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)    
Predicted Functional Partners:
DV20_06265
Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection; Belongs to the YbaB/EbfC family.
 
     0.871
DV20_06270
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
DV20_19040
Secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.699
DV20_19035
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.672
DV20_19010
Type VII secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.655
DV20_02345
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.653
DV20_19005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.635
DV20_18155
Secretion protein EccC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.623
DV20_34185
Hypothetical protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dep [...]
  
     0.588
DV20_04475
PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.585
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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