STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_09220Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
DV20_09215
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.885
DV20_09210
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.747
DV20_09205
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.537
DV20_09195
Benzoylformate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.
       0.523
DV20_09200
Benzaldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family.
       0.523
DV20_42945
benzoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.506
DV20_42950
2-hydroxyglutaryl-CoA dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
DV20_35655
Chlorophyllase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.451
DV20_15975
Chlorophyllase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
DV20_16000
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.422
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.