STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_10345Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (975 aa)    
Predicted Functional Partners:
DV20_10320
Family 31 glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
 
  
 0.829
DV20_17205
Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase family 6.
  
  
  0.801
DV20_20940
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family.
  
  
 
0.766
DV20_26385
Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.732
DV20_11525
Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.718
DV20_37235
Endoglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase family 6.
  
  
 0.687
DV20_17245
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.682
DV20_22915
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.682
DV20_40705
Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.682
DV20_03065
Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
  
  0.661
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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