STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_137953-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)    
Predicted Functional Partners:
DV20_08555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.924
DV20_11295
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.802
DV20_36530
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.779
DV20_18535
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.778
DV20_04900
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.762
DV20_43050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.737
DV20_19740
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.723
DV20_19735
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.710
DV20_36505
Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.710
DV20_12325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.706
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.