STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_15205Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)    
Predicted Functional Partners:
DV20_15210
Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.999
DV20_15195
4-carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
DV20_39475
3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.994
DV20_19470
Catalyzes the formation of protocatechuate from 4-hydroxybenzoate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.979
DV20_01180
Hydroxybenzoate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.975
DV20_17405
4-hydroxybenzoate 3-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.956
DV20_15200
Adhesin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.945
DV20_15220
3-oxoadipate:succinyl-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.931
DV20_15225
3-oxoadipate:succinyl-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.925
DV20_15190
IclR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.865
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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