STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acpPAcyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (81 aa)    
Predicted Functional Partners:
DV20_26670
Arabinosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.997
DV20_08555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.994
DV20_19945
ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.990
DV20_36380
NADH dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.982
DV20_11295
Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.975
DV20_19960
3-oxoacyl-ACP synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.940
DV20_21365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.939
DV20_43050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.913
DV20_12325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.887
nuoC
NADH dehydrogenase; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family.
   
  0.887
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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