STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_23825Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)    
Predicted Functional Partners:
DV20_26300
UDP-phosphate galactose phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.996
DV20_37705
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.996
DV20_23805
Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.946
DV20_36925
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.936
DV20_23810
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.931
DV20_23820
Exopolysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.929
DV20_23800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.928
DV20_23755
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.902
DV20_23765
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.884
DV20_22685
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.882
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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