STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_25810Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)    
Predicted Functional Partners:
DV20_25815
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.952
DV20_25830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.932
DV20_25820
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.926
DV20_25840
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.775
DV20_25835
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.773
DV20_25825
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.723
DV20_40675
Copper resistance protein CopD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
DV20_25805
Metalloprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.453
DV20_39640
Anti-sigma regulatory factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.415
DV20_23155
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.413
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.