STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_25970Zn-ribbon protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)    
Predicted Functional Partners:
DV20_25975
Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.980
DV20_25965
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.900
DV20_07170
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.793
rbpA-2
Electron transporter; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.666
DV20_39270
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.661
DV20_17890
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.656
DV20_30600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.621
DV20_17870
Cytochrome C oxidase subunit IV; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
   
 0.609
DV20_19940
PucR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.605
DV20_24870
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.584
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.