STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DV20_26020SalK; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)    
Predicted Functional Partners:
DV20_18330
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
DV20_25680
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.494
DV20_32935
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.451
DV20_15640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.448
DV20_43235
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.429
DV20_39655
Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.428
DV20_41660
Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.412
DV20_32600
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.409
DV20_16040
F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.405
Your Current Organism:
Amycolatopsis rifamycinica
NCBI taxonomy Id: 287986
Other names: A. rifamycinica, ATCC 27643, Amycolatopsis rifamycinica Bala et al. 2004, DSM 46095, JCM 12674, strain NT 19
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.